Section 3:

 How do biofilms impact our world?

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About Section 3

In section 2 of this module you learned that biofilms form and grow in practically every possible environment on earth.  That being the case, what is their impact on earth?   Can we use them for beneficial purpose? How do they affect human life? We explore these questions here.

Objectives and Outcomes of Section 3

Objectives

The objectives of this section are

• to provide you, on the one hand, with a few more detailed examples how biofilms can be used in beneficial ways;
• to give you,  on the other hand, a few more detailed examples of some of the harmful impacts of biofilms.

Outcomes

Upon completion of this section, you will be able

• to discuss more detailed examples of both the beneficial and harmful impacts of biofilms on our world;
• to describe in an informal way how the biofilm mechanism works to achieve either a beneficial or harmful effect, based on the situation in which the biofilm appears.

OVERVIEW

From exploring sections 1 and 2 you have learned that biofilms

• are a natural and important part of our world

• are found virtually everywhere on earth, including in extreme environments

• are an integral part of the human body

• can be quite harmful to human health

• cause industry all sorts of problems and expense

• have beneficial uses as well as harmful impacts

In this section we explore some of these impacts of biofilms in more detail.  Remember as you explore this section that although we speak of biofilms as the single issue we are exploring, there are many, many different kinds of biofilms, each made up of colonies of different microorganisms, which is why some can be good and others bad.

Both some beneficial and some detrimental aspects of biofilms are summarized below.

BENEFICIAL BIOFILMS

In natural environments

As we have already pointed out, biofilms are all around us, on us, and in us.  Obviously, then, not all biofilms are harmful. Many play an important role in the ecology of the earth and the sustainability of life in general. The report, "Global Environmental Change: Microbial Contributions, Microbial Solutions," points out: ". . .the basic chemistry of Earth's surface is determined by biological activity, especially that of the many trillions of microbes in soil and water. Microbes make up the majority of the living biomass on Earth and, as such, have major roles in the recycling of elements vital to life."  Imagine that!  "Microbes make up the majority of the living biomass on Earth," and, as we are learning, those microbes often live in biofilm colonies on surfaces.

For example, it is known that bacteria are early colonizers (in a biofilm) of initially clean surfaces submerged in water. Scientists have been able to document a predictable pattern of the way in which biofilms form on a clean surface under water. Whether the surface in question is a boat hull floating on top of the water, or a new deep sea vent at the bottom of the ocean, microbes are already present in the those environments and are capable of rapid attachment to and community development as a biofilm on those surfaces (the boat hull or the deep sea vent).

It is important to recognize that microorganisms, such as bacteria, that colonize in biofilms have evolved along with other organisms, including human beings. While some bacteria produce effects that are bad for other organisms, most bacteria are harmless or even beneficial. When it comes to bacteria, higher organisms (like us) are just another environment to colonize.  So here's a thought: humans, who are often thought to be the colonizers of the world, are themselves the target of colonial powers, in the form of the many microorganisms that sneak into and inhabit our body!

Water and wastewater treatment
 

One of the best examples of successful, beneficial application biofilms to solve a huge problem is in the cleaning of wastewater.  Think of it this way.  We know that microorganisms are the main agents that cause decay in dead plants and animals. Decay happens (partly) as the microorganisms feed on the tissue of the dead organism.  Since that is true, perhaps one could engineer a system that uses the proper microorganisms (in the form of a biofilm) to process wastewater and sewage:  if the contaminated water were passed through such a biofilm, perhaps the microorganisms in the biofilm would eat (and thus remove) the harmful organic material from the water.

Good idea!  Indeed, even before biofilms were recognized and became the subject of intense research, engineers were taking advantage of natural biofilm environmental activity (without knowing about biofilms) in developing water-cleaning systems. Biofilms have been used successfully in water and wastewater treatment for well over a century. English engineers developed the first sand filter treatment methods for both water and wastewater treatment in the 1860s. In such filtration systems the the filter medium (i.e., sand) presents surfaces to which microbes that feed on the organic material in the water being treated can attach.  The result?  The formation of a beneficial biofilm that eats the "bad" stuff in the water, effectively filtering it. Of course, we don't want the microorganisms in the biofilm to get into the filtered water, or for chunks of biofilm to detach from the colony and make it through the system.  Ideally, the biofilm stays attached to the filtration system and can be cleaned when the system is flushed.

Interestingly, scientists and water treatment engineers have discovered that drinking water and wastewater that have been processed with a biofilm system in a treatment plant are more "biologically stable" than water filtered by other types of treatment systems. This just means that there is likely to be less microorganism contamination in water that has passed through a biofilm-based filter than there is in water that has passed through some alternative treatment system. This implies that biofilm treated water typically has lower disinfectant demand (e.g., use of chlorine) and disinfection by-product formation (e.g., that unsavory taste and smell of chlorine) potential than water treated in other ways if the water prior to treatment is high in the kind of nutrients the biofilm craves (which in this case is organic carbon).

People are finicky.  We want our drinking water to be crystal clear, have no odd odor, and to taste, well, like pure water.  Water that is safe to drink because of being treated with chlorine can still have an odd color, smell bad, and taste worse.  So, drinking water utilities go to great lengths to provide us with the kind of drinking water we want (using ozone in the primary treatment phase is one approach that is used).  In any such system, a biofilm treatment phase may well be one approach that will help yield the desired result.
 

Remediation of contaminated soil and groundwater

One of the less obvious beneficial applications of biofilms is in cleaning up oil and gasoline spills.  That's right, certain bacteria will eat oil and gasoline.  Remember that oil was produced over many years by decaying vegetation, so it is an organic compound.  We wouldn't recommend that you suck up any spilled oil or gasoline, but the fact that  some of the naturally occurring bacteria in soil love the stuff leads to a new idea: bioremediation.  This is a term that refers to the engineering of a biofilm that can be introduced into the area of an oil or gasoline spill to help clean up the mess, and all with natural, non-harmful means.

Indeed, bioremediation using biofilms has emerged as a technology of choice for cleaning up  groundwater and soil at many sites contaminated with hazardous wastes. Bioremediation results in

• the reduction of both contaminant concentration and mass for many subsurface contaminants (e.g., petroleum hydrocarbons and chlorinated organics) and/or

• a beneficial speciation change in the bacteria in the biofilm that allow them to tackle other contaminants, such as heavy metals (such as mercury)

In other words, bioremdiation is a great idea!  How to actually make it work requires an understanding of biofilm processes and engineering systems for introducing a biofilm into the contaminated ground and providing the necessary environment below the surface of the ground to encourage the biofilm to do its job (illustrated in the diagram above).  For students interested in this topic, the study of biofilms and engineering (e.g., environmental engineering or chemical engineering).  Just keep on truckin', and you will get there.
 

Microbial leaching

As you probably know, mining for precious metals of various kinds (gold, silver, copper and so forth) is a messy job.  The desired metal is not generally found in nice, big, pure chunks.  The largest gold nugget ever found was reputed to weigh about 70 Kilograms.  But most gold, as with all other precious metals, is generally hard to see with the naked eye, mixed in the ground with dirt, rocks, and other ground debris--the ore from which the gold must be extracted (note that the ore in a good copper mine, for instance, will typically consist of less than 1% copper). The extraction process, when done with chemicals, is called "leaching."  For years, the leaching of copper, for example, was done with acid.  Not good, very not good for the environment.  In fact, most leaching technologies have resulted in toxic leftovers.

Well, guess what?  Today approximately 10 to 20 percent of copper mined in the United States is extracted from low grade ore with the assistance of biofilms.  And mining companies are making a considerable investment to extend this process to the extraction of other precious metals.

How is a biofilm engineered to accomplish this job?  Again, one must find a bacteria with a particular appetite--one that would eat the ore, say, that encased copper particles, thus releasing the copper to be recovered. This idea has led to the most common biofilm supported leaching process, called "heap leaching."  Low grade ore is placed in a "heap," and sprayed with a mildly acidified water solution that encourages the growth of a particular bacteria that eats away at the ore, releasing water soluble cupric ion (copper) that can then be recovered from the water.
 

Other biofilm technologies with promise

...coming soon.

Microbial fuel cells

Biofilm "traps"

Microbial "canaries"

DETRIMENTAL BIOFILM IMPACTS

In natural environments

Note:  This subsection is not yet well-developed.  However, you can get a glimpse of some of the detrimental effects of biofilms in the natural environment by continuing to read.

Note from the quote below the wide-ranging impact of biofilms on the environment.

"Microbes can negatively impact environments on a global level including producing and consuming atmospheric gases that affect climate; mobilizing toxic elements such as mercury, arsenic and selenium; and producing toxic algal blooms and creating oxygen depletion zones in lakes, rivers and coastal environments (eutrophication). Furthermore, the incidence of microbial diseases such as plague, cholera, Lyme disease, and West Nile Virus are linked to global change."
 

In industrial environments

Until this section is fully developed, recall from section 2 that  biofouling, biocorrosion, equipment damage and product contamination are constant and expensive problems in industry. Review the slide show in Section 2 of this module for an overview of these problems..

Public health

Note. This subsection is also not yet complete, but it does give you a sense of the wide-ranging influence of bad biofilms on public health.

Between 1980 and 1992, infectious disease deaths increased by 58% (39% after age adjustment); the major contributors were HIV infection and AIDS, respiratory disease (primarily pneumonia), and bloodstream infection. Infectious diseases are still broadly endemic, which just means that they never really go away for good, and are just part of the health landscape  That is, there is a large supply of the infectious agents that cause infectious diseases that keep the diseases alive. Infectious diseases remain the leading cause of death worldwide and the third leading cause of death in the United States. In the United States, each year, approximately 25% of physician visits are attributable to infectious diseases, with direct and indirect costs estimated at more than $120 billion.

Here is a new twist to this old story.  Biofilms have been implicated in the spread of infectious diseases.  Why? Research shows biofilms to be reservoirs for pathogenic organisms and sources of disease outbreaks.  As a result,  biotechnology measures are being created to control biofilms and/or sever the routes by which pathogenic organisms are transmitted from biofilms to susceptible people.

Biofilms are implicated in otitis media, the most common acute ear infection in children in the U.S. Other diseases in which biofilms play a role include bacterial endocarditis (infection of the inner surface of the heart and its valves), cystic fibrosis (a chronic disorder resulting in increased susceptibility to serious lung infection), and Legionnaire's disease (an acute respiratory infection resulting from the aspiration of clumps of Legionnella biofilms detached from air and water heating/cooling and distribution systems).

Biofilms may also be responsible for a wide variety of nosocomial (hospital-acquired) infections. Sources of biofilm-related infections can include the surfaces of catheters, medical implants, wound dressings, or other types of medical devices.

Biofilms avidly colonize many household surfaces, including toilets, sinks, countertops, and cutting boards in the kitchen and bath. Poor disinfection practices and ineffective cleaning products may increase the incidence of illnesses associated with pathogenic organisms in the household environment.

Test your knowledge  |  Go to Section Four

Section 4: What are key characteristics of biofilms?