|
| |
| Date |
Person |
Reading |
Topic |
| Jan 14 |
Brendan |
Chapter 1 |
Course introduction |
| Jan 21 |
Brendan |
Chapter 2 |
Bio and CS background |
| Jan 24 |
Brendan |
Chapter 3 |
Motif introduction |
| Jan 28 |
Brad |
Chapter 4.4 - end |
Motif finding |
| Jan 31 |
Brendan |
Chapter 5.1 -5.3 |
Sorting by reversals |
| Feb 4 |
Jason |
Chapter 5.4 - end |
breakpoints |
| Feb 7 |
Brendan |
Chapter 6.1 - 6.2 |
dynamic programming |
| Feb 11 |
Julian |
Chapter 6.3-6.5 |
Manhattan tourist problem |
| Feb 14 |
Brendan |
Chapter 6.6-6.10 |
alignments |
| Feb 18 |
Nate |
Chapter 6.11 - end |
gene prediction |
| Feb 25 |
|
|
Quiz 1 |
| Feb 28 |
Brendan |
Chapter 7.1-7.3 |
divide & conquer |
| Mar 4 |
Toby |
Chapter 7.4 - end |
four russians speedup |
| Mar 7 |
Brendan |
Chapter 8.1 - 8.2 |
graph algorithms |
| Mar 21 |
Brendan |
Chapter 8.3 - 8.5 |
DNA sequencing |
| Mar 28 |
Jason |
Chapter 8.6 - 8.9 |
sequencing by hybridization |
| Apr 1 |
Brendan |
Chapter 8.10 - end |
peptite sequencing, mass spec |
| Apr 4 |
Julian |
Chapter 10.1 - 10.3 |
clustering |
| Apr 8 |
Brendan |
Chapter 10.4 - 10.7 |
corrupted cliques |
| Apr 11 |
Nate |
Chapter 10.8 - end |
evolutionary trees |
| Apr 15 |
cancelled |
|
|
| Apr 18 |
Toby |
Chapter 11.1 - 11.2 |
hidden markov models |
| Apr 22 |
Brendan |
Chapter 11.3 - end |
building hmms |
| Apr 25 |
Brendan |
Chapter 9.1 - end |
pattern matching, BLAST |
| Apr 29 |
Brendan |
Chapter 12.1 - end |
randomized algorithms |
| May 4 |
|
|
Final, 8am - 9:50am CS
conf room |
|