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In our first meeting we identified the following general topics and groups:
- Modeling and Simulations (Malina, Anthony, Gaurav, Zuzana, Aaron)
- Computational Biology and Chemistry (Nathanial, Leif)
- Computational Neuroscience (Tim)
- Parallel Programming for Scientific Applications (Chris, Alok, Vijay)
- Engineering Science (Gaurav, Bob)
| Date |
Presenters |
Readings |
Topic |
| Jan 24 |
Brendan |
Appel's paper,
paper2
Anderson's paper |
N-body simulations for astrophysics |
| Jan 31 |
Malina, Zuzana, Anthony |
sc92,
arya |
N-body simulations, cont.
Large data sets
|
| Feb 7 |
Gaurav, Aaron, Anthony,
Brendan |
fof,
bryan et al |
Large data sets,
Friends-of-Friends |
| Feb 14 |
Brendan, Nathaniel |
comb cluster,
epimap |
Comp bio overview, Microarray clustering, Epitope Mapping |
| Feb 28 |
Leif, Vijay |
retroid agents
msa1 msa2 |
Quiz, Retroid agents,
Multiple Sequence alignment |
| Mar 7 |
Vijay |
|
retroid agents |
| Mar 21 |
Tim, Brendan |
CNS paper,
CNS talk |
computational neuroscience |
| Mar 28 |
Brendan, Zuzana, Nate |
NPC paper, see blog |
NP-completeness of mutual info clustering,
deterministic annealing, neuroscience |
| Apr 4 |
Chris, Alok, Vijay, others? |
US
options, parallel simulations |
parallel programming for scientific applications |
| Apr 11 |
Chris, Alok, Vijay |
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| Apr 18 |
Gaurav, Bob,
others? |
|
engineering science |
| Apr 25 |
Gaurav, Bob |
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